It will help both students and teachers to improve learning skills as well as professionals who just need a 3D model of visual aid for molecules. With that in mind, Avogadro is a must-have for people interested in chemistry. For the Chemists and the Wannabesīeing able to visualize molecules has a lot of uses for anybody in the chemistry industry. The app can also support a large selection of file formats including CML, XYZ, SDF, Mol2, and more. Avogadro can also be improved by adding extensions and plug-ins.
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FlexibilityĪs an open-source software, the source code of Avogadro is completely available online which can be modified and edited by interested contributors. Finally, the Align Tool repositions the molecule according to a certain axis while the Measure Tool measures bond lengths and other dimensions. Auto-rotate and Auto-optimize let users set the model to rotate continuously and optimize molecular geometry, respectively.
Additionally, the Selection Tool can be used to select specific parts of the model. The Bond-centric Manipulate Tool allows users to adjust the bonds and angles between molecules while the Manipulate Tool adjusts the molecules themselves. The Draw Tool is used to draw and adjust molecules in the 3D model while the Navigate Tool lets users view the model by panning, rotating, and scaling across the window. There are nine main tools for creating the 3D molecule models: Draw, Navigate, Bond-centric Manipulate, Manipulate, Selection, Auto-rotate, Auto-optimize, Measure, and Align.
Editing ToolsĪvogadro's editing tools are very intuitive and easy to use. Finally, the 3D graphic can be viewed in the preview window opposite of the options panel. It offers flexible rendering and a powerful plugin architecture. Additional options for each tool will be displayed at the options panel on the left side of the app window. Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. The toolbar contains the editing tools you will need to create 3D graphics of molecules. Avogadro has a simple interface that is composed only of a toolbar, preview window, and options panel.